SNP Detail For rs9400239
1.Mapping Information
Human SNP ID rs9400239
Human chromosome chr6
Human SNP position 108656460
Pig chromosome chr1
Pig SNP position 84040448
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region6q21
Chromosome idchr6
Chromosome position108656460
Reported geneFOXO3
Mapped geneFOXO3
Upstream gene id
Downstream gene id
SNP gene ids2309
Upstream gene distance
Downstream gene distance
SNP risk allelers9400239-C
SNPsrs9400239
Merged0
SNP id current9400239
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.69
P value0.0000001
Pvalue mlog7
P value text(EA, women)
Or beta0.023
%95 Ci[0.014-0.031] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region6q21
Chromosome idchr6
Chromosome position108656460
Reported geneFOXO3
Mapped geneFOXO3
Upstream gene id
Downstream gene id
SNP gene ids2309
Upstream gene distance
Downstream gene distance
SNP risk allelers9400239-C
SNPsrs9400239
Merged0
SNP id current9400239
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.688
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA)
Or beta0.019
%95 Ci[0.012-0.025] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region6q21
Chromosome idchr6
Chromosome position108656460
Reported geneFOXO3
Mapped geneFOXO3
Upstream gene id
Downstream gene id
SNP gene ids2309
Upstream gene distance
Downstream gene distance
SNP risk allelers9400239-C
SNPsrs9400239
Merged0
SNP id current9400239
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.673
P value0.00000007
Pvalue mlog7.15490195998574
P value text
Or beta0.017
%95 Ci[0.011-0.024] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783