SNP Detail For rs9394438
1.Mapping Information
Human SNP ID rs9394438
Human chromosome chr6
Human SNP position 37564327
Pig chromosome chr7
Pig SNP position 38052196
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region6p21.2
Chromosome idchr6
Chromosome position37564327
Reported geneNR
Mapped geneMIR4462 - MDGA1
Upstream gene id100616413
Downstream gene id266727
SNP gene ids
Upstream gene distance8905
Downstream gene distance68181
SNP risk allelers9394438-G
SNPsrs9394438
Merged0
SNP id current9394438
Contextupstream_gene_variant
Intergenic1
Allele frequency0.713317013374944
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP30)
Or beta0.1671
%95 Ci[0.094-0.24] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848