SNP Detail For rs9388489
1.Mapping Information
Human SNP ID rs9388489
Human chromosome chr6
Human SNP position 126377573
Pig chromosome chr1
Pig SNP position 40435573
2.Annotation Information
PubMed ID19430480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430480
StudyGenome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample7,514 cases, 9,045 controls
Replication sample4,267 cases, 4,670 controls, 4,342 trios from 2,319 families
Region6q22.32
Chromosome idchr6
Chromosome position126377573
Reported geneC6orf173
Mapped geneCENPW
Upstream gene id
Downstream gene id
SNP gene ids387103
Upstream gene distance
Downstream gene distance
SNP risk allelers9388489-G
SNPsrs9388489
Merged0
SNP id current9388489
Contextintergenic_variant
Intergenic0
Allele frequency0.45
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta1.17
%95 Ci[1.10-1.24]
PlatformAffymetrix, Illumina [841622] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000392