Human SNP ID | rs9388489 |
---|---|
Human chromosome | chr6 |
Human SNP position | 126377573 |
Pig chromosome | chr1 |
Pig SNP position | 40435573 |
PubMed ID | 19430480 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19430480 |
Study | Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 7,514 cases, 9,045 controls |
Replication sample | 4,267 cases, 4,670 controls, 4,342 trios from 2,319 families |
Region | 6q22.32 |
Chromosome id | chr6 |
Chromosome position | 126377573 |
Reported gene | C6orf173 |
Mapped gene | CENPW |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 387103 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9388489-G |
SNPs | rs9388489 |
Merged | 0 |
SNP id current | 9388489 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.10-1.24] |
Platform | Affymetrix, Illumina [841622] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000392 |