Human SNP ID | rs9383938 |
---|---|
Human chromosome | chr6 |
Human SNP position | 151666222 |
Pig chromosome | chr1 |
Pig SNP position | 17035207 |
PubMed ID | 22976474 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22976474 |
Study | A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11. |
Disease/Trait | Breast cancer |
Initial sample | 3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls |
Replication sample | 562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151666222 |
Reported gene | NR |
Mapped gene | LOC105378058 - ESR1 |
Upstream gene id | 105378058 |
Downstream gene id | 2099 |
SNP gene ids | |
Upstream gene distance | 3269 |
Downstream gene distance | 24274 |
SNP risk allele | rs9383938-T |
SNPs | rs9383938 |
Merged | 0 |
SNP id current | 9383938 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.28 |
%95 Ci | [NR] |
Platform | Illumina [2608509] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001683 |