SNP Detail For rs9383938
1.Mapping Information
Human SNP ID rs9383938
Human chromosome chr6
Human SNP position 151666222
Pig chromosome chr1
Pig SNP position 17035207
2.Annotation Information
PubMed ID22976474
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22976474
StudyA meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.
Disease/TraitBreast cancer
Initial sample3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls
Replication sample562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls
Region6q25.1
Chromosome idchr6
Chromosome position151666222
Reported geneNR
Mapped geneLOC105378058 - ESR1
Upstream gene id105378058
Downstream gene id2099
SNP gene ids
Upstream gene distance3269
Downstream gene distance24274
SNP risk allelers9383938-T
SNPsrs9383938
Merged0
SNP id current9383938
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.28
%95 Ci[NR]
PlatformIllumina [2608509] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001683