SNP Detail For rs9378805
1.Mapping Information
Human SNP ID rs9378805
Human chromosome chr6
Human SNP position 417727
Pig chromosome chr7
Pig SNP position 1100
2.Annotation Information
PubMed ID21131588
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/21131588
StudyGenome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.
Disease/TraitChronic lymphocytic leukemia
Initial sample407 European ancestry cases, 296 European ancestry controls
Replication sample252 European ancestry cases, 965 European ancestry controls
Region6p25.3
Chromosome idchr6
Chromosome position417727
Reported geneNR
Mapped geneIRF4 - LOC105374875
Upstream gene id3662
Downstream gene id105374875
SNP gene ids
Upstream gene distance6284
Downstream gene distance33285
SNP risk allelers9378805-C
SNPsrs9378805
Merged0
SNP id current9378805
Contextintergenic_variant
Intergenic1
Allele frequency0.49
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.38
%95 Ci[1.20-1.58]
PlatformAffymetrix [827777]
CNVN
Mapped traitchronic lymphocytic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000095
Study accessionGCST000906