Human SNP ID | rs9378805 |
---|---|
Human chromosome | chr6 |
Human SNP position | 417727 |
Pig chromosome | chr7 |
Pig SNP position | 1100 |
PubMed ID | 21131588 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/21131588 |
Study | Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 407 European ancestry cases, 296 European ancestry controls |
Replication sample | 252 European ancestry cases, 965 European ancestry controls |
Region | 6p25.3 |
Chromosome id | chr6 |
Chromosome position | 417727 |
Reported gene | NR |
Mapped gene | IRF4 - LOC105374875 |
Upstream gene id | 3662 |
Downstream gene id | 105374875 |
SNP gene ids | |
Upstream gene distance | 6284 |
Downstream gene distance | 33285 |
SNP risk allele | rs9378805-C |
SNPs | rs9378805 |
Merged | 0 |
SNP id current | 9378805 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.49 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.38 |
%95 Ci | [1.20-1.58] |
Platform | Affymetrix [827777] |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST000906 |