SNP Detail For rs937254
1.Mapping Information
Human SNP ID rs937254
Human chromosome chr15
Human SNP position 57617966
Pig chromosome chr1
Pig SNP position 126484125
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitHDL cholesterol
Initial sample7,813 African American individuals
Replication sample4,323 African American and Afro-Caribbean individuals
Region15q21.3
Chromosome idchr15
Chromosome position57617966
Reported geneGCOM1
Mapped geneMYZAP, GCOM1
Upstream gene id
Downstream gene id
SNP gene ids100820829, 145781
Upstream gene distance
Downstream gene distance
SNP risk allelers937254-A
SNPsrs937254
Merged0
SNP id current937254
Contextintron_variant
Intergenic0
Allele frequency0.57
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.077
%95 Ci[0.047-0.107] unit increase
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000974