SNP Detail For rs9371942
1.Mapping Information
Human SNP ID rs9371942
Human chromosome chr6
Human SNP position 155913388
Pig chromosome chr1
Pig SNP position 13221386
2.Annotation Information
PubMed ID25985088
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25985088
StudyInvestigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis.
Disease/TraitLachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis
Initial sample50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions
Replication sampleNA
Region6q25.3
Chromosome idchr6
Chromosome position155913388
Reported geneLOC101928923
Mapped geneLOC101928923, LOC105378072
Upstream gene id
Downstream gene id
SNP gene ids101928923, 105378072
Upstream gene distance
Downstream gene distance
SNP risk allelers9371942-A
SNPsrs9371942
Merged
SNP id current9371942
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta5
%95 Ci[2.38-10]
PlatformAffymetrix [12033]
CNVN
Mapped traitsalivary gland lesion, autoimmune pancreatitis type 1, lachrymal gland lesion
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007124, http://www.ebi.ac.uk/efo/EFO_1000780, http://www.ebi.ac.uk/efo/EFO_0007125
Study accessionGCST002913