Human SNP ID | rs9371942 |
---|---|
Human chromosome | chr6 |
Human SNP position | 155913388 |
Pig chromosome | chr1 |
Pig SNP position | 13221386 |
PubMed ID | 25985088 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25985088 |
Study | Investigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis. |
Disease/Trait | Lachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis |
Initial sample | 50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions |
Replication sample | NA |
Region | 6q25.3 |
Chromosome id | chr6 |
Chromosome position | 155913388 |
Reported gene | LOC101928923 |
Mapped gene | LOC101928923, LOC105378072 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928923, 105378072 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9371942-A |
SNPs | rs9371942 |
Merged | |
SNP id current | 9371942 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 5 |
%95 Ci | [2.38-10] |
Platform | Affymetrix [12033] |
CNV | N |
Mapped trait | salivary gland lesion, autoimmune pancreatitis type 1, lachrymal gland lesion |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007124, http://www.ebi.ac.uk/efo/EFO_1000780, http://www.ebi.ac.uk/efo/EFO_0007125 |
Study accession | GCST002913 |