SNP Detail For rs9371601
1.Mapping Information
Human SNP ID rs9371601
Human chromosome chr6
Human SNP position 152469438
Pig chromosome chr1
Pig SNP position 16150888
2.Annotation Information
PubMed ID21926972
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926972
StudyLarge-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
Disease/TraitBipolar disorder
Initial sample7,481 European ancestry cases, 9,250 European ancestry controls
Replication sample4,496 European ancestry cases, 42,422 European ancestry controls
Region6q25.2
Chromosome idchr6
Chromosome position152469438
Reported geneSYNE1
Mapped geneSYNE1
Upstream gene id
Downstream gene id
SNP gene ids23345
Upstream gene distance
Downstream gene distance
SNP risk allelers9371601-T
SNPsrs9371601
Merged0
SNP id current9371601
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.1
%95 Ci[NR]
PlatformAffymetrix, Illumina [2415422] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001241
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region6q25.2
Chromosome idchr6
Chromosome position152469438
Reported geneSYNE1
Mapped geneSYNE1
Upstream gene id
Downstream gene id
SNP gene ids23345
Upstream gene distance
Downstream gene distance
SNP risk allelers9371601-?
SNPsrs9371601
Merged0
SNP id current9371601
Contextintron_variant
Intergenic0
Allele frequency0.346
P value0.000000004
Pvalue mlog8.39794000867203
P value text(Modelling analysis)
Or beta
%95 Ci
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877