Human SNP ID | rs936094 |
---|---|
Human chromosome | chr4 |
Human SNP position | 158523162 |
Pig chromosome | chr8 |
Pig SNP position | 49873630 |
PubMed ID | 22076464 |
---|---|
Journal | Leukemia |
Link | www.ncbi.nlm.nih.gov/pubmed/22076464 |
Study | Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls |
Replication sample | 951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls |
Region | 4q32.1 |
Chromosome id | chr4 |
Chromosome position | 158523162 |
Reported gene | RXFP1 |
Mapped gene | RXFP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 59350 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs936094-C |
SNPs | rs936094 |
Merged | 0 |
SNP id current | 936094 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (ETV6-RUNX1 positive, Northern European) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [355750] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001320 |