Human SNP ID | rs9357121 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31272702 |
Pig chromosome | chr7 |
Pig SNP position | 24726426 |
PubMed ID | 26582766 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | LDL cholesterol |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31272702 |
Reported gene | HLA-C |
Mapped gene | HLA-C - RPL3P2 |
Upstream gene id | 3107 |
Downstream gene id | 116935 |
SNP gene ids | |
Upstream gene distance | 566 |
Downstream gene distance | 7589 |
SNP risk allele | rs9357121-T |
SNPs | rs9357121 |
Merged | |
SNP id current | 9357121 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.85 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.842 |
%95 Ci | [1.25-2.43] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST003216 |
PubMed ID | 26582766 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26582766 |
Study | Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations. |
Disease/Trait | Cholesterol, total |
Initial sample | 8,344 Han Chinese ancestry individuals |
Replication sample | 14,739 Han Chinese ancestry individuals |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31272702 |
Reported gene | HLA-C |
Mapped gene | HLA-C - RPL3P2 |
Upstream gene id | 3107 |
Downstream gene id | 116935 |
SNP gene ids | |
Upstream gene distance | 566 |
Downstream gene distance | 7589 |
SNP risk allele | rs9357121-T |
SNPs | rs9357121 |
Merged | |
SNP id current | 9357121 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.85 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 2.062 |
%95 Ci | [1.42-2.71] unit increase |
Platform | Affymetrix, Illumina [2573667] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST003214 |