SNP Detail For rs9357121
1.Mapping Information
Human SNP ID rs9357121
Human chromosome chr6
Human SNP position 31272702
Pig chromosome chr7
Pig SNP position 24726426
2.Annotation Information
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitLDL cholesterol
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region6p21.33
Chromosome idchr6
Chromosome position31272702
Reported geneHLA-C
Mapped geneHLA-C - RPL3P2
Upstream gene id3107
Downstream gene id116935
SNP gene ids
Upstream gene distance566
Downstream gene distance7589
SNP risk allelers9357121-T
SNPsrs9357121
Merged
SNP id current9357121
Contextupstream_gene_variant
Intergenic1
Allele frequency0.85
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.842
%95 Ci[1.25-2.43] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST003216
PubMed ID26582766
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26582766
StudyGenetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.
Disease/TraitCholesterol, total
Initial sample8,344 Han Chinese ancestry individuals
Replication sample14,739 Han Chinese ancestry individuals
Region6p21.33
Chromosome idchr6
Chromosome position31272702
Reported geneHLA-C
Mapped geneHLA-C - RPL3P2
Upstream gene id3107
Downstream gene id116935
SNP gene ids
Upstream gene distance566
Downstream gene distance7589
SNP risk allelers9357121-T
SNPsrs9357121
Merged
SNP id current9357121
Contextupstream_gene_variant
Intergenic1
Allele frequency0.85
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta2.062
%95 Ci[1.42-2.71] unit increase
PlatformAffymetrix, Illumina [2573667] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST003214