Human SNP ID | rs9345396 |
---|---|
Human chromosome | chr6 |
Human SNP position | 93779501 |
Pig chromosome | chr1 |
Pig SNP position | 69087642 |
PubMed ID | 26089329 |
---|---|
Journal | Stroke |
Link | www.ncbi.nlm.nih.gov/pubmed/26089329 |
Study | Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans. |
Disease/Trait | Stroke |
Initial sample | up to 1,592 African American cases, up to 13,154 African American controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 93779501 |
Reported gene | TSG1 |
Mapped gene | TSG1 - LOC105377901 |
Upstream gene id | 643432 |
Downstream gene id | 105377901 |
SNP gene ids | |
Upstream gene distance | 3020 |
Downstream gene distance | 766724 |
SNP risk allele | rs9345396-T |
SNPs | rs9345396 |
Merged | |
SNP id current | 9345396 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.01 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (cohort study) |
Or beta | 5.78 |
%95 Ci | [3.03-11.02] |
Platform | Affymetrix, Illumina [up to 2600000] (imputed) |
CNV | N |
Mapped trait | stroke |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
Study accession | GCST002987 |
PubMed ID | 26089329 |
Journal | Stroke |
Link | www.ncbi.nlm.nih.gov/pubmed/26089329 |
Study | Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans. |
Disease/Trait | Stroke |
Initial sample | up to 1,592 African American cases, up to 13,154 African American controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 93779501 |
Reported gene | TSG1 |
Mapped gene | TSG1 - LOC105377901 |
Upstream gene id | 643432 |
Downstream gene id | 105377901 |
SNP gene ids | |
Upstream gene distance | 3020 |
Downstream gene distance | 766724 |
SNP risk allele | rs9345396-T |
SNPs | rs9345396 |
Merged | |
SNP id current | 9345396 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.01 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.75 |
%95 Ci | [1.1-2.4] unit increase |
Platform | Affymetrix, Illumina [up to 2600000] (imputed) |
CNV | N |
Mapped trait | stroke |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
Study accession | GCST002987 |