SNP Detail For rs9345396
1.Mapping Information
Human SNP ID rs9345396
Human chromosome chr6
Human SNP position 93779501
Pig chromosome chr1
Pig SNP position 69087642
2.Annotation Information
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitStroke
Initial sampleup to 1,592 African American cases, up to 13,154 African American controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position93779501
Reported geneTSG1
Mapped geneTSG1 - LOC105377901
Upstream gene id643432
Downstream gene id105377901
SNP gene ids
Upstream gene distance3020
Downstream gene distance766724
SNP risk allelers9345396-T
SNPsrs9345396
Merged
SNP id current9345396
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.0000001
Pvalue mlog7
P value text(cohort study)
Or beta5.78
%95 Ci[3.03-11.02]
PlatformAffymetrix, Illumina [up to 2600000] (imputed)
CNVN
Mapped traitstroke
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000712
Study accessionGCST002987
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitStroke
Initial sampleup to 1,592 African American cases, up to 13,154 African American controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position93779501
Reported geneTSG1
Mapped geneTSG1 - LOC105377901
Upstream gene id643432
Downstream gene id105377901
SNP gene ids
Upstream gene distance3020
Downstream gene distance766724
SNP risk allelers9345396-T
SNPsrs9345396
Merged
SNP id current9345396
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.0000001
Pvalue mlog7
P value text
Or beta1.75
%95 Ci[1.1-2.4] unit increase
PlatformAffymetrix, Illumina [up to 2600000] (imputed)
CNVN
Mapped traitstroke
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000712
Study accessionGCST002987