SNP Detail For rs932316
1.Mapping Information
Human SNP ID rs932316
Human chromosome chr6
Human SNP position 25640972
Pig chromosome chr7
Pig SNP position 21673626
2.Annotation Information
PubMed ID19084217
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19084217
StudyVariants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.
Disease/TraitIron status biomarkers
Initial sample459 European ancestry twin pairs
Replication sampleNA
Region6p22.2
Chromosome idchr6
Chromosome position25640972
Reported geneSCGN
Mapped geneLRRC16A - SCGN
Upstream gene id55604
Downstream gene id10590
SNP gene ids
Upstream gene distance20442
Downstream gene distance11229
SNP risk allelers932316-?
SNPsrs932316
Merged0
SNP id current932316
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(transferrin saturation)
Or beta
%95 Ci
PlatformIllumina [315887]
CNVN
Mapped traitiron biomarker measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004461
Study accessionGCST000301