Human SNP ID | rs9315632 |
---|---|
Human chromosome | chr13 |
Human SNP position | 38942490 |
Pig chromosome | chr18 |
Pig SNP position | 29792113 |
PubMed ID | 20694148 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/20694148 |
Study | A genome-wide association study of the metabolic syndrome in Indian Asian men. |
Disease/Trait | Metabolic syndrome |
Initial sample | 2,554 Indian Asian ancestry individuals |
Replication sample | 2,240 Indian Asian ancestry individuals |
Region | 13q13.3 |
Chromosome id | chr13 |
Chromosome position | 38942490 |
Reported gene | STOML3 |
Mapped gene | FREM2 - STOML3 |
Upstream gene id | 341640 |
Downstream gene id | 161003 |
SNP gene ids | |
Upstream gene distance | 55359 |
Downstream gene distance | 23435 |
SNP risk allele | rs9315632-? |
SNPs | rs9315632 |
Merged | 0 |
SNP id current | 9315632 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (WHR) |
Or beta | |
%95 Ci | |
Platform | Illumina [308011] |
CNV | N |
Mapped trait | waist-hip ratio, metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST000753 |