SNP Detail For rs9314308
1.Mapping Information
Human SNP ID rs9314308
Human chromosome chr8
Human SNP position 25687163
Pig chromosome chr14
Pig SNP position 10864065
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to efavirenz-containing treatment in HIV 1 infection (virologic failure)
Initial sampleUp to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals
Replication sampleNA
Region8p21.2
Chromosome idchr8
Chromosome position25687163
Reported geneNR
Mapped geneLOC105379332
Upstream gene id
Downstream gene id
SNP gene ids105379332
Upstream gene distance
Downstream gene distance
SNP risk allelers9314308-C
SNPsrs9314308
Merged0
SNP id current9314308
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(phenotype 3)
Or beta1.55
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, response to efavirenz, virologic response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006904, http://www.ebi.ac.uk/efo/EFO_0006906
Study accessionGCST002771