SNP Detail For rs9313296
1.Mapping Information
Human SNP ID rs9313296
Human chromosome chr5
Human SNP position 165950694
Pig chromosome chr16
Pig SNP position 62523547
2.Annotation Information
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitWeight
Initial sample1,780 Filipino ancestry females
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position165950694
Reported geneintergenic
Mapped geneRPL21P59 - RPL7P20
Upstream gene id100271174
Downstream gene id728843
SNP gene ids
Upstream gene distance45057
Downstream gene distance77790
SNP risk allelers9313296-C
SNPsrs9313296
Merged0
SNP id current9313296
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta10
%95 Ci[6.07-13.93] kg increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000837
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitWaist circumference
Initial sample1,779 Filipino ancestry females
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position165950694
Reported geneintergenic
Mapped geneRPL21P59 - RPL7P20
Upstream gene id100271174
Downstream gene id728843
SNP gene ids
Upstream gene distance45057
Downstream gene distance77790
SNP risk allelers9313296-C
SNPsrs9313296
Merged0
SNP id current9313296
Contextintergenic_variant
Intergenic1
Allele frequency0.01
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta9.4
%95 Ci[5.35-13.45] cm increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitwaist circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004342
Study accessionGCST000838