SNP Detail For rs931127
1.Mapping Information
Human SNP ID rs931127
Human chromosome chr11
Human SNP position 65637829
Pig chromosome chr2
Pig SNP position 5771141
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region11q13.1
Chromosome idchr11
Chromosome position65637829
Reported genePCNXL3
Mapped genePCNXL3 - SIPA1
Upstream gene id399909
Downstream gene id6494
SNP gene ids
Upstream gene distance390
Downstream gene distance278
SNP risk allelers931127-G
SNPsrs931127
Merged0
SNP id current931127
Contextupstream_gene_variant
Intergenic1
Allele frequency0.703
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.33
%95 Ci[1.18-1.48]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252