Human SNP ID | rs931127 |
---|---|
Human chromosome | chr11 |
Human SNP position | 65637829 |
Pig chromosome | chr2 |
Pig SNP position | 5771141 |
PubMed ID | 26606652 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/26606652 |
Study | GWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls |
Replication sample | NA |
Region | 11q13.1 |
Chromosome id | chr11 |
Chromosome position | 65637829 |
Reported gene | PCNXL3 |
Mapped gene | PCNXL3 - SIPA1 |
Upstream gene id | 399909 |
Downstream gene id | 6494 |
SNP gene ids | |
Upstream gene distance | 390 |
Downstream gene distance | 278 |
SNP risk allele | rs931127-G |
SNPs | rs931127 |
Merged | 0 |
SNP id current | 931127 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.703 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.18-1.48] |
Platform | Illumina [580483] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003252 |