SNP Detail For rs930847
1.Mapping Information
Human SNP ID rs930847
Human chromosome chr15
Human SNP position 101018357
Pig chromosome chr1
Pig SNP position 155809683
2.Annotation Information
PubMed ID23291589
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23291589
StudyGenome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.
Disease/TraitCorneal structure
Initial sample13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals
Replication sampleNA
Region15q26.3
Chromosome idchr15
Chromosome position101018357
Reported geneLRRK1
Mapped geneLRRK1
Upstream gene id
Downstream gene id
SNP gene ids79705
Upstream gene distance
Downstream gene distance
SNP risk allelers930847-T
SNPsrs930847
Merged0
SNP id current930847
Contextintron_variant
Intergenic0
Allele frequency0.77
P value6E-19
Pvalue mlog18.2218487496163
P value text
Or beta0.11
%95 Ci[0.071-0.149] unit decrease
PlatformAffymetrix, Illumina [~ 1000000] (imputed)
CNVN
Mapped traitcorneal topography
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004345
Study accessionGCST001806