Human SNP ID | rs9296949 |
---|---|
Human chromosome | chr6 |
Human SNP position | 14597751 |
Pig chromosome | chr7 |
Pig SNP position | 11325756 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (HVA/MHPG ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 6p23 |
Chromosome id | chr6 |
Chromosome position | 14597751 |
Reported gene | intergenic |
Mapped gene | LOC101928354 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928354 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9296949-T |
SNPs | rs9296949 |
Merged | 0 |
SNP id current | 9296949 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.3021 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | HVA measurement, MHPG measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005133 |
Study accession | GCST001823 |