SNP Detail For rs9296949
1.Mapping Information
Human SNP ID rs9296949
Human chromosome chr6
Human SNP position 14597751
Pig chromosome chr7
Pig SNP position 11325756
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (HVA/MHPG ratio)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region6p23
Chromosome idchr6
Chromosome position14597751
Reported geneintergenic
Mapped geneLOC101928354
Upstream gene id
Downstream gene id
SNP gene ids101928354
Upstream gene distance
Downstream gene distance
SNP risk allelers9296949-T
SNPsrs9296949
Merged0
SNP id current9296949
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.3021
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitHVA measurement, MHPG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005131, http://www.ebi.ac.uk/efo/EFO_0005133
Study accessionGCST001823