SNP Detail For rs9290936
1.Mapping Information
Human SNP ID rs9290936
Human chromosome chr3
Human SNP position 190534846
Pig chromosome chr13
Pig SNP position 137399125
2.Annotation Information
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitWaist circumference
Initial sample1,779 Filipino ancestry females
Replication sampleNA
Region3q28
Chromosome idchr3
Chromosome position190534846
Reported geneIL1RAP
Mapped geneIL1RAP
Upstream gene id
Downstream gene id
SNP gene ids3556
Upstream gene distance
Downstream gene distance
SNP risk allelers9290936-G
SNPsrs9290936
Merged0
SNP id current9290936
Contextintron_variant
Intergenic0
Allele frequency0.61
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.79
%95 Ci[1.03-2.55] cm increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitwaist circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004342
Study accessionGCST000838