Human SNP ID | rs9287719 |
---|---|
Human chromosome | chr2 |
Human SNP position | 10570604 |
Pig chromosome | chr3 |
Pig SNP position | 134723902 |
PubMed ID | 25217961 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
Disease/Trait | Prostate cancer |
Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
Replication sample | NA |
Region | 2p25.1 |
Chromosome id | chr2 |
Chromosome position | 10570604 |
Reported gene | NOL10 |
Mapped gene | LOC105373426 - NOL10 |
Upstream gene id | 105373426 |
Downstream gene id | 79954 |
SNP gene ids | |
Upstream gene distance | 21928 |
Downstream gene distance | 162 |
SNP risk allele | rs9287719-C |
SNPs | rs9287719 |
Merged | 0 |
SNP id current | 9287719 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.46 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.06 |
%95 Ci | [1.04-1.08] |
Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002606 |
PubMed ID | 25217961 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
Disease/Trait | Prostate cancer |
Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
Replication sample | NA |
Region | 2p25.1 |
Chromosome id | chr2 |
Chromosome position | 10570604 |
Reported gene | NOL10 |
Mapped gene | LOC105373426 - NOL10 |
Upstream gene id | 105373426 |
Downstream gene id | 79954 |
SNP gene ids | |
Upstream gene distance | 21928 |
Downstream gene distance | 162 |
SNP risk allele | rs9287719-C |
SNPs | rs9287719 |
Merged | 0 |
SNP id current | 9287719 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.46 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (EA) |
Or beta | 1.07 |
%95 Ci | [1.04-1.09] |
Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002606 |