SNP Detail For rs9287719
1.Mapping Information
Human SNP ID rs9287719
Human chromosome chr2
Human SNP position 10570604
Pig chromosome chr3
Pig SNP position 134723902
2.Annotation Information
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region2p25.1
Chromosome idchr2
Chromosome position10570604
Reported geneNOL10
Mapped geneLOC105373426 - NOL10
Upstream gene id105373426
Downstream gene id79954
SNP gene ids
Upstream gene distance21928
Downstream gene distance162
SNP risk allelers9287719-C
SNPsrs9287719
Merged0
SNP id current9287719
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.46
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.06
%95 Ci[1.04-1.08]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region2p25.1
Chromosome idchr2
Chromosome position10570604
Reported geneNOL10
Mapped geneLOC105373426 - NOL10
Upstream gene id105373426
Downstream gene id79954
SNP gene ids
Upstream gene distance21928
Downstream gene distance162
SNP risk allelers9287719-C
SNPsrs9287719
Merged0
SNP id current9287719
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.46
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA)
Or beta1.07
%95 Ci[1.04-1.09]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606