Human SNP ID | rs9273076 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32644524 |
Pig chromosome | chr7 |
Pig SNP position | 29172636 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32644524 |
Reported gene | HLA-DQ1 |
Mapped gene | HLA-DQA1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3117 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9273076-T |
SNPs | rs9273076 |
Merged | |
SNP id current | 9273076 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000000000008 |
Pvalue mlog | 12.096910013008 |
P value text | (conditional) |
Or beta | 1.3 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |