SNP Detail For rs9273076
1.Mapping Information
Human SNP ID rs9273076
Human chromosome chr6
Human SNP position 32644524
Pig chromosome chr7
Pig SNP position 29172636
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32644524
Reported geneHLA-DQ1
Mapped geneHLA-DQA1
Upstream gene id
Downstream gene id
SNP gene ids3117
Upstream gene distance
Downstream gene distance
SNP risk allelers9273076-T
SNPsrs9273076
Merged
SNP id current9273076
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.0000000000008
Pvalue mlog12.096910013008
P value text(conditional)
Or beta1.3
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156