SNP Detail For rs9272535
1.Mapping Information
Human SNP ID rs9272535
Human chromosome chr6
Human SNP position 32638979
Pig chromosome chr7
Pig SNP position 29167183
2.Annotation Information
PubMed ID21131588
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/21131588
StudyGenome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.
Disease/TraitChronic lymphocytic leukemia
Initial sample407 European ancestry cases, 296 European ancestry controls
Replication sample252 European ancestry cases, 965 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32638979
Reported geneHLA-DQA1
Mapped geneHLA-DQA1
Upstream gene id
Downstream gene id
SNP gene ids3117
Upstream gene distance
Downstream gene distance
SNP risk allelers9272535-A
SNPsrs9272535
Merged0
SNP id current9272535
Contextmissense_variant
Intergenic0
Allele frequency0.27
P value0.00000009
Pvalue mlog7.04575749056067
P value text
Or beta1.61
%95 Ci[1.35-1.92]
PlatformAffymetrix [827777]
CNVN
Mapped traitchronic lymphocytic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000095
Study accessionGCST000906