Human SNP ID | rs9271588 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32623176 |
Pig chromosome | chr7 |
Pig SNP position | 29147630 |
PubMed ID | 24097066 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097066 |
Study | A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren__s syndrome at 7q11.23. |
Disease/Trait | Sjæžšgren__s syndrome |
Initial sample | 542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls |
Replication sample | 1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32623176 |
Reported gene | HLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6 |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 33340 |
Downstream gene distance | 14220 |
SNP risk allele | rs9271588-T |
SNPs | rs9271588 |
Merged | 0 |
SNP id current | 9271588 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.532 |
P value | 9E-37 |
Pvalue mlog | 36.0457574905606 |
P value text | |
Or beta | 1.75 |
%95 Ci | [1.59-1.89] |
Platform | Affymetrix [556134] |
CNV | N |
Mapped trait | Sjogren syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000699 |
Study accession | GCST002217 |