SNP Detail For rs9271588
1.Mapping Information
Human SNP ID rs9271588
Human chromosome chr6
Human SNP position 32623176
Pig chromosome chr7
Pig SNP position 29147630
2.Annotation Information
PubMed ID24097066
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097066
StudyA genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren__s syndrome at 7q11.23.
Disease/TraitSjæžšgren__s syndrome
Initial sample542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls
Replication sample1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32623176
Reported geneHLA-DRB1, HLA-DQA1, c6orf10, BTNL2, HLA-DRA, HLA-DRB5, HLA-DRB6
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance33340
Downstream gene distance14220
SNP risk allelers9271588-T
SNPsrs9271588
Merged0
SNP id current9271588
Contextupstream_gene_variant
Intergenic1
Allele frequency0.532
P value9E-37
Pvalue mlog36.0457574905606
P value text
Or beta1.75
%95 Ci[1.59-1.89]
PlatformAffymetrix [556134]
CNVN
Mapped traitSjogren syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000699
Study accessionGCST002217