Human SNP ID | rs9270984 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32606214 |
Pig chromosome | chr7 |
Pig SNP position | 29139091 |
PubMed ID | 23273568 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23273568 |
Study | Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls |
Replication sample | 3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32606214 |
Reported gene | HLA-DRB1 |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 16378 |
Downstream gene distance | 31182 |
SNP risk allele | rs9270984-T |
SNPs | rs9270984 |
Merged | 0 |
SNP id current | 9270984 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.18 |
P value | 5E-24 |
Pvalue mlog | 23.3010299956639 |
P value text | |
Or beta | 1.73 |
%95 Ci | |
Platform | Illumina [2100739] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST001795 |