SNP Detail For rs9270984
1.Mapping Information
Human SNP ID rs9270984
Human chromosome chr6
Human SNP position 32606214
Pig chromosome chr7
Pig SNP position 29139091
2.Annotation Information
PubMed ID23273568
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23273568
StudyMeta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Disease/TraitSystemic lupus erythematosus
Initial sample1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls
Replication sample3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32606214
Reported geneHLA-DRB1
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance16378
Downstream gene distance31182
SNP risk allelers9270984-T
SNPsrs9270984
Merged0
SNP id current9270984
Contextintron_variant
Intergenic1
Allele frequency0.18
P value5E-24
Pvalue mlog23.3010299956639
P value text
Or beta1.73
%95 Ci
PlatformIllumina [2100739] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST001795