SNP Detail For rs9268923
1.Mapping Information
Human SNP ID rs9268923
Human chromosome chr6
Human SNP position 32465058
Pig chromosome chr7
Pig SNP position 29103052
2.Annotation Information
PubMed ID20228798
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20228798
StudyGenome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).
Disease/TraitUlcerative colitis
Initial sample1,043 European ancestry cases, 1,703 European ancestry controls
Replication sample2,539 European ancestry cases, 5,428 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32465058
Reported geneHLA-DRA
Mapped geneHLA-DRA - HLA-DRB5
Upstream gene id3122
Downstream gene id3127
SNP gene ids
Upstream gene distance20012
Downstream gene distance52316
SNP risk allelers9268923-C
SNPsrs9268923
Merged0
SNP id current9268923
Contextintron_variant
Intergenic1
Allele frequency0.67
P value0.000000000000004
Pvalue mlog14.397940008672
P value text
Or beta1.45
%95 Ci[1.33-1.59]
PlatformAffymetrix [1897764] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000623