Human SNP ID | rs9268923 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32465058 |
Pig chromosome | chr7 |
Pig SNP position | 29103052 |
PubMed ID | 20228798 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20228798 |
Study | Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL). |
Disease/Trait | Ulcerative colitis |
Initial sample | 1,043 European ancestry cases, 1,703 European ancestry controls |
Replication sample | 2,539 European ancestry cases, 5,428 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32465058 |
Reported gene | HLA-DRA |
Mapped gene | HLA-DRA - HLA-DRB5 |
Upstream gene id | 3122 |
Downstream gene id | 3127 |
SNP gene ids | |
Upstream gene distance | 20012 |
Downstream gene distance | 52316 |
SNP risk allele | rs9268923-C |
SNPs | rs9268923 |
Merged | 0 |
SNP id current | 9268923 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.67 |
P value | 0.000000000000004 |
Pvalue mlog | 14.397940008672 |
P value text | |
Or beta | 1.45 |
%95 Ci | [1.33-1.59] |
Platform | Affymetrix [1897764] (imputed) |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000623 |