Human SNP ID | rs9268528 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32415331 |
Pig chromosome | chr7 |
Pig SNP position | 29025910 |
PubMed ID | 22086417 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/22086417 |
Study | A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32. |
Disease/Trait | Nodular sclerosis Hodgkin lymphoma |
Initial sample | 393 European ancestry cases, 3,315 European ancestry controls |
Replication sample | 113 European ancestry cases, 214 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6;6;6;6;6 |
Chromosome position | 32460508;32604474;32142202;32415331;32416944 |
Reported gene | HLA-DQB1, HLA-DRB1 |
Mapped gene | HLA-DRA - HLA-DRB5; HLA-DRB1 - HLA-DQA1; FKBPL - PRRT1; BTNL2 - HLA-DRA; BTNL2 - HLA-DRA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6903608-T; rs2858870-C; rs204999-G; rs9268528-A; rs9268542-A |
SNPs | rs6903608; rs2858870; rs204999; rs9268528; rs9268542 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intergenic_variant; intergenic_variant; intergenic_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000000000000000008 |
Pvalue mlog | 17.096910013008 |
P value text | |
Or beta | 2.5 |
%95 Ci | [NR] |
Platform | Illumina [705591] |
CNV | N |
Mapped trait | nodular sclerosis Hodgkin lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004708 |
Study accession | GCST001323 |
PubMed ID | 22086417 |
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/22086417 |
Study | A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32. |
Disease/Trait | Nodular sclerosis Hodgkin lymphoma |
Initial sample | 393 European ancestry cases, 3,315 European ancestry controls |
Replication sample | 113 European ancestry cases, 214 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6;6;6;6;6 |
Chromosome position | 32460508;32604474;32142202;32415331;32416944 |
Reported gene | HLA-DQB1, HLA-DRB1 |
Mapped gene | HLA-DRA - HLA-DRB5; HLA-DRB1 - HLA-DQA1; FKBPL - PRRT1; BTNL2 - HLA-DRA; BTNL2 - HLA-DRA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6903608-C; rs2858870-T; rs204999-A; rs9268528-G; rs9268542-G |
SNPs | rs6903608; rs2858870; rs204999; rs9268528; rs9268542 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intergenic_variant; intergenic_variant; intergenic_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.7 |
%95 Ci | [NR] |
Platform | Illumina [705591] |
CNV | N |
Mapped trait | nodular sclerosis Hodgkin lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004708 |
Study accession | GCST001323 |