SNP Detail For rs9268528
1.Mapping Information
Human SNP ID rs9268528
Human chromosome chr6
Human SNP position 32415331
Pig chromosome chr7
Pig SNP position 29025910
2.Annotation Information
PubMed ID22086417
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/22086417
StudyA genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.
Disease/TraitNodular sclerosis Hodgkin lymphoma
Initial sample393 European ancestry cases, 3,315 European ancestry controls
Replication sample113 European ancestry cases, 214 European ancestry controls
Region6p21.32
Chromosome idchr6;6;6;6;6
Chromosome position32460508;32604474;32142202;32415331;32416944
Reported geneHLA-DQB1, HLA-DRB1
Mapped geneHLA-DRA - HLA-DRB5; HLA-DRB1 - HLA-DQA1; FKBPL - PRRT1; BTNL2 - HLA-DRA; BTNL2 - HLA-DRA
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers6903608-T; rs2858870-C; rs204999-G; rs9268528-A; rs9268542-A
SNPsrs6903608; rs2858870; rs204999; rs9268528; rs9268542
Merged0
SNP id current
Contextintron_variant; intron_variant; intergenic_variant; intergenic_variant; intergenic_variant
Intergenic
Allele frequencyNR
P value0.000000000000000008
Pvalue mlog17.096910013008
P value text
Or beta2.5
%95 Ci[NR]
PlatformIllumina [705591]
CNVN
Mapped traitnodular sclerosis Hodgkin lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004708
Study accessionGCST001323
PubMed ID22086417
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/22086417
StudyA genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32.
Disease/TraitNodular sclerosis Hodgkin lymphoma
Initial sample393 European ancestry cases, 3,315 European ancestry controls
Replication sample113 European ancestry cases, 214 European ancestry controls
Region6p21.32
Chromosome idchr6;6;6;6;6
Chromosome position32460508;32604474;32142202;32415331;32416944
Reported geneHLA-DQB1, HLA-DRB1
Mapped geneHLA-DRA - HLA-DRB5; HLA-DRB1 - HLA-DQA1; FKBPL - PRRT1; BTNL2 - HLA-DRA; BTNL2 - HLA-DRA
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers6903608-C; rs2858870-T; rs204999-A; rs9268528-G; rs9268542-G
SNPsrs6903608; rs2858870; rs204999; rs9268528; rs9268542
Merged0
SNP id current
Contextintron_variant; intron_variant; intergenic_variant; intergenic_variant; intergenic_variant
Intergenic
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.7
%95 Ci[NR]
PlatformIllumina [705591]
CNVN
Mapped traitnodular sclerosis Hodgkin lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004708
Study accessionGCST001323