SNP Detail For rs9268480
1.Mapping Information
Human SNP ID rs9268480
Human chromosome chr6
Human SNP position 32396067
Pig chromosome chr7
Pig SNP position 29006387
2.Annotation Information
PubMed ID19915573
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19915573
StudyA genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.
Disease/TraitUlcerative colitis
Initial sample376 Japanese ancestry cases, 934 Japanese ancestry controls
Replication sample376 Japanese ancestry cases, 1,097 Japanese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32396067
Reported geneBTNL2
Mapped geneBTNL2, LOC101929163
Upstream gene id
Downstream gene id
SNP gene ids56244, 101929163
Upstream gene distance
Downstream gene distance
SNP risk allelers9268480-G
SNPsrs9268480
Merged0
SNP id current9268480
Contextsynonymous_variant
Intergenic0
Allele frequency0.91
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.82
%95 Ci[1.43-2.33]
PlatformIllumina [513923]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000529