Human SNP ID | rs9268480 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32396067 |
Pig chromosome | chr7 |
Pig SNP position | 29006387 |
PubMed ID | 19915573 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19915573 |
Study | A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population. |
Disease/Trait | Ulcerative colitis |
Initial sample | 376 Japanese ancestry cases, 934 Japanese ancestry controls |
Replication sample | 376 Japanese ancestry cases, 1,097 Japanese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32396067 |
Reported gene | BTNL2 |
Mapped gene | BTNL2, LOC101929163 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56244, 101929163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9268480-G |
SNPs | rs9268480 |
Merged | 0 |
SNP id current | 9268480 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.91 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.82 |
%95 Ci | [1.43-2.33] |
Platform | Illumina [513923] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000529 |