Human SNP ID | rs9267673 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31915902 |
Pig chromosome | chr7 |
Pig SNP position | 27804966 |
PubMed ID | 21105107 |
---|---|
Journal | Hepatology |
Link | www.ncbi.nlm.nih.gov/pubmed/21105107 |
Study | Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma. |
Disease/Trait | Hepatocellular carcinoma |
Initial sample | 180 Korean ancestry cases, 271 Korean ancestry controls |
Replication sample | 206 Korean ancestry cases, 416 East Asian ancestry controls, |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31915902 |
Reported gene | C2 |
Mapped gene | C2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 717 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9267673-? |
SNPs | rs9267673 |
Merged | 0 |
SNP id current | 9267673 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.08 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.97 |
%95 Ci | [1.47-2.64] |
Platform | Affymetrix [658897] |
CNV | N |
Mapped trait | hepatocellular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000182 |
Study accession | GCST000902 |