Human SNP ID | rs9267488 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31546470 |
Pig chromosome | chr7 |
Pig SNP position | 27579100 |
PubMed ID | 26291516 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/26291516 |
Study | Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes. |
Disease/Trait | Myositis |
Initial sample | 1,710 European ancestry cases, 4,724 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31546470 |
Reported gene | ATP6V1G2, DDX39B |
Mapped gene | ATP6V1G2-DDX39B, ATP6V1G2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100532737, 534 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9267488-G |
SNPs | rs9267488 |
Merged | |
SNP id current | 9267488 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 6E-49 |
Pvalue mlog | 48.2218487496163 |
P value text | |
Or beta | 2.32 |
%95 Ci | [NR] |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | myositis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000783 |
Study accession | GCST003092 |