SNP Detail For rs9267488
1.Mapping Information
Human SNP ID rs9267488
Human chromosome chr6
Human SNP position 31546470
Pig chromosome chr7
Pig SNP position 27579100
2.Annotation Information
PubMed ID26291516
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/26291516
StudyGenome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.
Disease/TraitMyositis
Initial sample1,710 European ancestry cases, 4,724 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31546470
Reported geneATP6V1G2, DDX39B
Mapped geneATP6V1G2-DDX39B, ATP6V1G2
Upstream gene id
Downstream gene id
SNP gene ids100532737, 534
Upstream gene distance
Downstream gene distance
SNP risk allelers9267488-G
SNPsrs9267488
Merged
SNP id current9267488
Contextsplice_region_variant
Intergenic0
Allele frequencyNR
P value6E-49
Pvalue mlog48.2218487496163
P value text
Or beta2.32
%95 Ci[NR]
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitmyositis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000783
Study accessionGCST003092