SNP Detail For rs9263739
1.Mapping Information
Human SNP ID rs9263739
Human chromosome chr6
Human SNP position 31143579
Pig chromosome chr7
Pig SNP position 27288290
2.Annotation Information
PubMed ID19915573
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19915573
StudyA genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.
Disease/TraitUlcerative colitis
Initial sample376 Japanese ancestry cases, 934 Japanese ancestry controls
Replication sample376 Japanese ancestry cases, 1,097 Japanese ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31143579
Reported geneHLA
Mapped geneCCHCR1
Upstream gene id
Downstream gene id
SNP gene ids54535
Upstream gene distance
Downstream gene distance
SNP risk allelers9263739-T
SNPsrs9263739
Merged0
SNP id current9263739
Contextintron_variant
Intergenic0
Allele frequency0.15
P value4E-67
Pvalue mlog66.397940008672
P value text
Or beta2.73
%95 Ci[2.43-3.07]
PlatformIllumina [513923]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000529