SNP Detail For rs925946
1.Mapping Information
Human SNP ID rs925946
Human chromosome chr11
Human SNP position 27645655
Pig chromosome chr2
Pig SNP position 35275175
2.Annotation Information
PubMed ID19079260
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19079260
StudyGenome-wide association yields new sequence variants at seven loci that associate with measures of obesity.
Disease/TraitWeight
Initial sample72,598 European ancestry individuals, 1,160 African American individuals
Replication sampleUp to 11,036 European ancestry individuals, 32,615 individuals
Region11p14.1
Chromosome idchr11
Chromosome position27645655
Reported geneBDNF
Mapped geneBDNF-AS
Upstream gene id
Downstream gene id
SNP gene ids497258
Upstream gene distance
Downstream gene distance
SNP risk allelers925946-T
SNPsrs925946
Merged0
SNP id current925946
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta3.8
%95 Ci[2.55-5.05] percentage SD increase
PlatformIllumina [305846]
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000299
PubMed ID19079260
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19079260
StudyGenome-wide association yields new sequence variants at seven loci that associate with measures of obesity.
Disease/TraitBody mass index
Initial sample72,598 European ancestry individuals, 1,160 African American individuals
Replication sampleUp to 11,036 European ancestry individuals, 32,615 individuals
Region11p14.1
Chromosome idchr11
Chromosome position27645655
Reported geneBDNF
Mapped geneBDNF-AS
Upstream gene id
Downstream gene id
SNP gene ids497258
Upstream gene distance
Downstream gene distance
SNP risk allelers925946-T
SNPsrs925946
Merged0
SNP id current925946
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.0000000009
Pvalue mlog9.04575749056067
P value text
Or beta3.85
%95 Ci[2.62-5.08] % SD increase
PlatformIllumina [305846]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST000296