SNP Detail For rs9257616
1.Mapping Information
Human SNP ID rs9257616
Human chromosome chr6
Human SNP position 29212944
Pig chromosome chr7
Pig SNP position 26032116
2.Annotation Information
PubMed ID24047820
JournalMol Autism
Linkwww.ncbi.nlm.nih.gov/pubmed/24047820
StudyCommon variation contributes to the genetic architecture of social communication traits.
Disease/TraitSocial communication problems
Initial sample5,584 European ancestry children
Replication sample1,364 European ancestry children
Region6p22.1
Chromosome idchr6
Chromosome position29212944
Reported geneOR2J2, TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR214J1, OR5V1, OR12D3, OR2J3
Mapped geneLOC105375006
Upstream gene id
Downstream gene id
SNP gene ids105375006
Upstream gene distance
Downstream gene distance
SNP risk allelers9257616-G
SNPsrs9257616
Merged0
SNP id current9257616
Contextupstream_gene_variant
Intergenic0
Allele frequency0.56
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.093
%95 Ci[0.058-0.128] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitsocial communication impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005427
Study accessionGCST002194