SNP Detail For rs921943
1.Mapping Information
Human SNP ID rs921943
Human chromosome chr5
Human SNP position 79020653
Pig chromosome chr2
Pig SNP position 89525709
2.Annotation Information
PubMed ID23720494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23720494
StudyGenome-wide association study identifies loci affecting blood copper, selenium and zinc.
Disease/TraitBlood trace element (Se levels)
Initial sample5477 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79020653
Reported geneBHMT2, BHMT, DMGDH
Mapped geneDMGDH
Upstream gene id
Downstream gene id
SNP gene ids29958
Upstream gene distance
Downstream gene distance
SNP risk allelers921943-T
SNPsrs921943
Merged0
SNP id current921943
Contextintron_variant
Intergenic0
Allele frequencyNR
P value9E-28
Pvalue mlog27.0457574905606
P value text
Or beta0.246
%95 Ci[0.20-0.29] unit increase
PlatformIllumina [> 2500000] (imputed)
CNVN
Mapped traitserum selenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005266
Study accessionGCST002039
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitBlood and toenail selenium levels
Initial sample9,639 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79020653
Reported geneDMGDH, ARSB, BHMT2
Mapped geneDMGDH
Upstream gene id
Downstream gene id
SNP gene ids29958
Upstream gene distance
Downstream gene distance
SNP risk allelers921943-T
SNPsrs921943
Merged0
SNP id current921943
Contextintron_variant
Intergenic0
Allele frequency0.29
P value2E-39
Pvalue mlog38.698970004336
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2379663] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002670