Human SNP ID | rs921943 |
---|---|
Human chromosome | chr5 |
Human SNP position | 79020653 |
Pig chromosome | chr2 |
Pig SNP position | 89525709 |
PubMed ID | 23720494 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23720494 |
Study | Genome-wide association study identifies loci affecting blood copper, selenium and zinc. |
Disease/Trait | Blood trace element (Se levels) |
Initial sample | 5477 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79020653 |
Reported gene | BHMT2, BHMT, DMGDH |
Mapped gene | DMGDH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 29958 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs921943-T |
SNPs | rs921943 |
Merged | 0 |
SNP id current | 921943 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 9E-28 |
Pvalue mlog | 27.0457574905606 |
P value text | |
Or beta | 0.246 |
%95 Ci | [0.20-0.29] unit increase |
Platform | Illumina [> 2500000] (imputed) |
CNV | N |
Mapped trait | serum selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005266 |
Study accession | GCST002039 |
PubMed ID | 25343990 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25343990 |
Study | Genome-wide association study of selenium concentrations. |
Disease/Trait | Blood and toenail selenium levels |
Initial sample | 9,639 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79020653 |
Reported gene | DMGDH, ARSB, BHMT2 |
Mapped gene | DMGDH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 29958 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs921943-T |
SNPs | rs921943 |
Merged | 0 |
SNP id current | 921943 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 2E-39 |
Pvalue mlog | 38.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2379663] (imputed) |
CNV | N |
Mapped trait | selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006331 |
Study accession | GCST002670 |