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SNP Detail For rs921231
1.Mapping Information
| Human SNP ID | rs921231 |
|---|---|
| Human chromosome | chr8 |
| Human SNP position | 91348168 |
| Pig chromosome | chr4 |
| Pig SNP position | 49191149 |
2.Annotation Information
| PubMed ID | 21897333 |
|---|---|
| Journal | Pharmacogenet Genomics |
| Link | www.ncbi.nlm.nih.gov/pubmed/21897333 |
| Study | Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men. |
| Disease/Trait | Fat distribution (HIV) |
| Initial sample | 192 European ancestry male cases |
| Replication sample | NA |
| Region | 8q21.3 |
| Chromosome id | chr8 |
| Chromosome position | 91348168 |
| Reported gene | SLC26A7 |
| Mapped gene | SLC26A7 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 115111 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs921231-G |
| SNPs | rs921231 |
| Merged | 0 |
| SNP id current | 921231 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.17 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (multivariate) |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [319818] |
| CNV | N |
| Mapped trait | HIV-1 infection, body fat distribution |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004341 |
| Study accession | GCST001343 |
| PubMed ID | 21897333 |
| Journal | Pharmacogenet Genomics |
| Link | www.ncbi.nlm.nih.gov/pubmed/21897333 |
| Study | Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men. |
| Disease/Trait | Fat distribution (HIV) |
| Initial sample | 192 European ancestry male cases |
| Replication sample | NA |
| Region | 8q21.3 |
| Chromosome id | chr8 |
| Chromosome position | 91348168 |
| Reported gene | SLC26A7 |
| Mapped gene | SLC26A7 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 115111 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs921231-G |
| SNPs | rs921231 |
| Merged | 0 |
| SNP id current | 921231 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.17 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (univariate, upper trunk) |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [319818] |
| CNV | N |
| Mapped trait | HIV-1 infection, body fat distribution |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004341 |
| Study accession | GCST001343 |
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