Human SNP ID | rs920915 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58396268 |
Pig chromosome | chr1 |
Pig SNP position | 125704892 |
PubMed ID | 23455636 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23455636 |
Study | Seven new loci associated with age-related macular degeneration. |
Disease/Trait | Age-related macular degeneration |
Initial sample | 6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls |
Replication sample | 9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58396268 |
Reported gene | LIPC |
Mapped gene | LOC102724766 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102724766 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs920915-C |
SNPs | rs920915 |
Merged | 0 |
SNP id current | 920915 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.48 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.09-1.17] |
Platform | Affymetrix, Illumina [2442884] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001884 |