Human SNP ID | rs918304 |
---|---|
Human chromosome | chr12 |
Human SNP position | 108483764 |
Pig chromosome | chr14 |
Pig SNP position | 44843742 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 108483764 |
Reported gene | NR |
Mapped gene | LOC105369967 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105369967 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs918304-C |
SNPs | rs918304 |
Merged | 0 |
SNP id current | 918304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.00963820126262628 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (IGP13) |
Or beta | 1.5827 |
%95 Ci | [0.88-2.28] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |
PubMed ID | 23382691 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 108483764 |
Reported gene | NR |
Mapped gene | LOC105369967 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105369967 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs918304-C |
SNPs | rs918304 |
Merged | 0 |
SNP id current | 918304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.00963820126262628 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (IGP53) |
Or beta | 1.5994 |
%95 Ci | [0.9-2.3] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |