SNP Detail For rs916977
1.Mapping Information
Human SNP ID rs916977
Human chromosome chr15
Human SNP position 28268218
Pig chromosome chr15
Pig SNP position 63533663
2.Annotation Information
PubMed ID18252221
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18252221
StudyThree genome-wide association studies and a linkage analysis identify HERC2 as a human iris color gene.
Disease/TraitIris color
Initial sample925 Erasmus Ruchpen individuals, 481 European ancestry females
Replication sample5,575 European ancestry individuals, 1,292 Erasmus Ruchpen individuals
Region15q13.1
Chromosome idchr15
Chromosome position28268218
Reported geneHERC2
Mapped geneHERC2
Upstream gene id
Downstream gene id
SNP gene ids8924
Upstream gene distance
Downstream gene distance
SNP risk allelers916977-?
SNPsrs916977
Merged0
SNP id current916977
Contextintron_variant
Intergenic0
Allele frequencyNR
P value1E-43
Pvalue mlog43
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [up to 500000]
CNVN
Mapped traiteye color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003949
Study accessionGCST000146