Human SNP ID | rs912969 |
---|---|
Human chromosome | chr13 |
Human SNP position | 103214754 |
Pig chromosome | chr11 |
Pig SNP position | 78749562 |
PubMed ID | 19247474 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/19247474 |
Study | Genome-wide and candidate gene association study of cigarette smoking behaviors. |
Disease/Trait | Smoking behavior |
Initial sample | 2,617 European ancestry smokers, 1,725 European ancestry controls |
Replication sample | NA |
Region | 13q33.1 |
Chromosome id | chr13 |
Chromosome position | 103214754 |
Reported gene | intergenic |
Mapped gene | SLC10A2 - LOC105370338 |
Upstream gene id | 6555 |
Downstream gene id | 105370338 |
SNP gene ids | |
Upstream gene distance | 147908 |
Downstream gene distance | 76215 |
SNP risk allele | rs912969-? |
SNPs | rs912969 |
Merged | 0 |
SNP id current | 912969 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.07 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (SMKDU) |
Or beta | 0.14 |
%95 Ci | [NR] years decrease |
Platform | Illumina [~ 518000] |
CNV | N |
Mapped trait | smoking behavior |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318 |
Study accession | GCST000349 |