SNP Detail For rs909814
1.Mapping Information
Human SNP ID rs909814
Human chromosome chr1
Human SNP position 22247449
Pig chromosome chr6
Pig SNP position 74267203
2.Annotation Information
PubMed ID22675492
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22675492
StudyGenome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.
Disease/TraitTestosterone levels
Initial sample1,589 European ancestry female individuals
Replication sampleNA
Region1p36.12
Chromosome idchr1
Chromosome position22247449
Reported geneintergenic
Mapped geneLOC105376850 - MIR4418
Upstream gene id105376850
Downstream gene id100616433
SNP gene ids
Upstream gene distance74944
Downstream gene distance18790
SNP risk allelers909814-T
SNPsrs909814
Merged0
SNP id current909814
Contextintergenic_variant
Intergenic1
Allele frequency0.39
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta0.103
%95 Ci[NR] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traittestosterone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004908
Study accessionGCST001555
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region1p36.12
Chromosome idchr1
Chromosome position22247449
Reported geneNR
Mapped geneLOC105376850 - MIR4418
Upstream gene id105376850
Downstream gene id100616433
SNP gene ids
Upstream gene distance74944
Downstream gene distance18790
SNP risk allelers909814-C
SNPsrs909814
Merged0
SNP id current909814
Contextintergenic_variant
Intergenic1
Allele frequency0.57460965776591
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP14)
Or beta0.1421
%95 Ci[0.08-0.204] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848