Human SNP ID | rs909814 |
---|---|
Human chromosome | chr1 |
Human SNP position | 22247449 |
Pig chromosome | chr6 |
Pig SNP position | 74267203 |
PubMed ID | 22675492 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22675492 |
Study | Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women. |
Disease/Trait | Testosterone levels |
Initial sample | 1,589 European ancestry female individuals |
Replication sample | NA |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22247449 |
Reported gene | intergenic |
Mapped gene | LOC105376850 - MIR4418 |
Upstream gene id | 105376850 |
Downstream gene id | 100616433 |
SNP gene ids | |
Upstream gene distance | 74944 |
Downstream gene distance | 18790 |
SNP risk allele | rs909814-T |
SNPs | rs909814 |
Merged | 0 |
SNP id current | 909814 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 0.103 |
%95 Ci | [NR] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | testosterone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004908 |
Study accession | GCST001555 |
PubMed ID | 23382691 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 1p36.12 |
Chromosome id | chr1 |
Chromosome position | 22247449 |
Reported gene | NR |
Mapped gene | LOC105376850 - MIR4418 |
Upstream gene id | 105376850 |
Downstream gene id | 100616433 |
SNP gene ids | |
Upstream gene distance | 74944 |
Downstream gene distance | 18790 |
SNP risk allele | rs909814-C |
SNPs | rs909814 |
Merged | 0 |
SNP id current | 909814 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.57460965776591 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (IGP14) |
Or beta | 0.1421 |
%95 Ci | [0.08-0.204] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |