PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs909674
1.Mapping Information
| Human SNP ID | rs909674 |
|---|---|
| Human chromosome | chr22 |
| Human SNP position | 39463164 |
| Pig chromosome | chr5 |
| Pig SNP position | 6097633 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 1,848 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.29096 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (IgG1G0N) |
| Or beta | 0.083 |
| %95 Ci | [0.054-0.112] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001849 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 1,848 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.29096 |
| P value | 0.0000000002 |
| Pvalue mlog | 9.69897000433601 |
| P value text | (IgG1G1N) |
| Or beta | 0.0721 |
| %95 Ci | [0.050-0.094] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001849 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 1,848 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.29096 |
| P value | 0.000009 |
| Pvalue mlog | 5.04575749056067 |
| P value text | (IgG1G2N) |
| Or beta | 0.0651 |
| %95 Ci | [0.036-0.094] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001849 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.298923567230632 |
| P value | 0.0000000005 |
| Pvalue mlog | 9.30102999566398 |
| P value text | (IGP22) |
| Or beta | 0.2099 |
| %95 Ci | [0.14-0.28] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299100489968792 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (IGP30) |
| Or beta | 0.1606 |
| %95 Ci | [0.095-0.227] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.298878222915738 |
| P value | 0.0000000002 |
| Pvalue mlog | 9.69897000433601 |
| P value text | (IGP34) |
| Or beta | 0.2136 |
| %95 Ci | [0.15-0.28] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.298476014725569 |
| P value | 9E-24 |
| Pvalue mlog | 23.0457574905606 |
| P value text | (IGP39) |
| Or beta | 0.3388 |
| %95 Ci | [0.27-0.4] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 1E-24 |
| Pvalue mlog | 24 |
| P value text | (IGP40) |
| Or beta | 0.3447 |
| %95 Ci | [0.28-0.41] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 0.0000000000003 |
| Pvalue mlog | 12.5228787452803 |
| P value text | (IGP45) |
| Or beta | 0.2468 |
| %95 Ci | [0.18-0.31] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299056983073497 |
| P value | 0.000000003 |
| Pvalue mlog | 8.52287874528033 |
| P value text | (IGP49) |
| Or beta | 0.2003 |
| %95 Ci | [0.13-0.27] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.298923567230632 |
| P value | 0.0000000001 |
| Pvalue mlog | 10 |
| P value text | (IGP5) |
| Or beta | 0.2178 |
| %95 Ci | [0.15-0.28] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299146468388246 |
| P value | 0.0000000002 |
| Pvalue mlog | 9.69897000433601 |
| P value text | (IGP62) |
| Or beta | 0.2148 |
| %95 Ci | [0.15-0.28] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (IGP64) |
| Or beta | 0.1872 |
| %95 Ci | [0.12-0.25] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 0.0000000000000001 |
| Pvalue mlog | 16 |
| P value text | (IGP66) |
| Or beta | 0.281 |
| %95 Ci | [0.21-0.35] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.298923976402493 |
| P value | 0.0000000006 |
| Pvalue mlog | 9.22184874961635 |
| P value text | (IGP68) |
| Or beta | 0.2094 |
| %95 Ci | [0.14-0.28] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299323467231387 |
| P value | 0.000009 |
| Pvalue mlog | 5.04575749056067 |
| P value text | (IGP69) |
| Or beta | 0.151 |
| %95 Ci | [0.084-0.218] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | NR |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 0.0000000000000004 |
| Pvalue mlog | 15.397940008672 |
| P value text | (IGP70) |
| Or beta | 0.2754 |
| %95 Ci | [0.21-0.34] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299013119715176 |
| P value | 0.0000000000000006 |
| Pvalue mlog | 15.2218487496163 |
| P value text | (IGP71) |
| Or beta | 0.2737 |
| %95 Ci | [0.21-0.34] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299146275601069 |
| P value | 0.000000000000002 |
| Pvalue mlog | 14.698970004336 |
| P value text | (IGP72) |
| Or beta | 0.2695 |
| %95 Ci | [0.2-0.34] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3, TAB1, CACNA1I, SYNGR1 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.299056983073497 |
| P value | 0.000000003 |
| Pvalue mlog | 8.52287874528033 |
| P value text | (IGP9) |
| Or beta | 0.2011 |
| %95 Ci | [0.13-0.27] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 26634245 |
| Journal | BMC Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
| Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
| Disease/Trait | Post bronchodilator FEV1 |
| Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
| Replication sample | NA |
| Region | 22q13.1 |
| Chromosome id | chr22 |
| Chromosome position | 39463164 |
| Reported gene | MGAT3 |
| Mapped gene | MGAT3 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4248 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs909674-C |
| SNPs | rs909674 |
| Merged | 0 |
| SNP id current | 909674 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.926 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (AA) |
| Or beta | 0.143 |
| %95 Ci | NR unit increase |
| Platform | Illumina [NR] (imputed) |
| CNV | N |
| Mapped trait | forced expiratory volume, response to bronchodilator |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366 |
| Study accession | GCST003262 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|