Human SNP ID | rs900400 |
---|---|
Human chromosome | chr3 |
Human SNP position | 157080986 |
Pig chromosome | chr13 |
Pig SNP position | 105078605 |
PubMed ID | 20372150 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20372150 |
Study | Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight. |
Disease/Trait | Birth weight |
Initial sample | 10,623 European ancestry individuals |
Replication sample | 27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 157080986 |
Reported gene | LEKR1, CCNL1 |
Mapped gene | LEKR1 - LINC00880 |
Upstream gene id | 389170 |
Downstream gene id | 339894 |
SNP gene ids | |
Upstream gene distance | 33327 |
Downstream gene distance | 681 |
SNP risk allele | rs900400-C |
SNPs | rs900400 |
Merged | 0 |
SNP id current | 900400 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 2E-35 |
Pvalue mlog | 34.698970004336 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.073-0.10] s.d. decrease |
Platform | Affymetrix, Illumina [~ 2400000] (imputed) |
CNV | N |
Mapped trait | birth weight |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004344 |
Study accession | GCST000648 |
PubMed ID | 23202124 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23202124 |
Study | New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism. |
Disease/Trait | Birth weight |
Initial sample | Up to 26,836 European ancestry individuals |
Replication sample | Up to 42,519 European ancestry individuals |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 157080986 |
Reported gene | CCNL1 |
Mapped gene | LEKR1 - LINC00880 |
Upstream gene id | 389170 |
Downstream gene id | 339894 |
SNP gene ids | |
Upstream gene distance | 33327 |
Downstream gene distance | 681 |
SNP risk allele | rs900400-C |
SNPs | rs900400 |
Merged | 0 |
SNP id current | 900400 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 4E-38 |
Pvalue mlog | 37.397940008672 |
P value text | |
Or beta | 0.072 |
%95 Ci | [0.060-0.084] gram decrease |
Platform | Affymetrix, Illumina [~ 2700000] (imputed) |
CNV | N |
Mapped trait | birth weight |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004344 |
Study accession | GCST001758 |
PubMed ID | 25231870 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 3q25.31 |
Chromosome id | chr3 |
Chromosome position | 157080986 |
Reported gene | LEKR1, CCNL1 |
Mapped gene | LEKR1 - LINC00880 |
Upstream gene id | 389170 |
Downstream gene id | 339894 |
SNP gene ids | |
Upstream gene distance | 33327 |
Downstream gene distance | 681 |
SNP risk allele | rs900400-T |
SNPs | rs900400 |
Merged | 0 |
SNP id current | 900400 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.61 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.02-0.04] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |