SNP Detail For rs899997
1.Mapping Information
Human SNP ID rs899997
Human chromosome chr15
Human SNP position 78727236
Pig chromosome chr1
Pig SNP position 302710371
2.Annotation Information
PubMed ID24262325
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/24262325
StudyShared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.
Disease/TraitCoronary artery disease or large artery stroke
Initial sample2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls
Replication sampleNA
Region15q25.1
Chromosome idchr15
Chromosome position78727236
Reported geneADAMTS7
Mapped geneLOC105370913
Upstream gene id
Downstream gene id
SNP gene ids105370913
Upstream gene distance
Downstream gene distance
SNP risk allelers899997-?
SNPsrs899997
Merged0
SNP id current899997
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitlarge artery stroke, coronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005524, http://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST002290