Human SNP ID | rs894638 |
---|---|
Human chromosome | chr4 |
Human SNP position | 16118049 |
Pig chromosome | chr8 |
Pig SNP position | 10984181 |
PubMed ID | 26420894 |
---|---|
Journal | Nephrol Dial Transplant |
Link | www.ncbi.nlm.nih.gov/pubmed/26420894 |
Study | Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium. |
Disease/Trait | Glomerular filtration rate in chronic kidney disease |
Initial sample | up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases |
Replication sample | NA |
Region | 4p15.32 |
Chromosome id | chr4 |
Chromosome position | 16118049 |
Reported gene | PROM1, TAPT1 |
Mapped gene | PROM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8842 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs894638-C |
SNPs | rs894638 |
Merged | |
SNP id current | 894638 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.19 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (EA) |
Or beta | 0.1 |
%95 Ci | [0.061-0.139] unit decrease |
Platform | Illumina [~ 8300000] (imputed) |
CNV | N |
Mapped trait | glomerular filtration rate, chronic kidney disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884 |
Study accession | GCST003139 |