SNP Detail For rs894638
1.Mapping Information
Human SNP ID rs894638
Human chromosome chr4
Human SNP position 16118049
Pig chromosome chr8
Pig SNP position 10984181
2.Annotation Information
PubMed ID26420894
JournalNephrol Dial Transplant
Linkwww.ncbi.nlm.nih.gov/pubmed/26420894
StudyGenetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.
Disease/TraitGlomerular filtration rate in chronic kidney disease
Initial sampleup to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases
Replication sampleNA
Region4p15.32
Chromosome idchr4
Chromosome position16118049
Reported genePROM1, TAPT1
Mapped genePROM1
Upstream gene id
Downstream gene id
SNP gene ids8842
Upstream gene distance
Downstream gene distance
SNP risk allelers894638-C
SNPsrs894638
Merged
SNP id current894638
Contextintergenic_variant
Intergenic0
Allele frequency0.19
P value0.000008
Pvalue mlog5.09691001300805
P value text(EA)
Or beta0.1
%95 Ci[0.061-0.139] unit decrease
PlatformIllumina [~ 8300000] (imputed)
CNVN
Mapped traitglomerular filtration rate, chronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST003139