Human SNP ID | rs893818 |
---|---|
Human chromosome | chr15 |
Human SNP position | 73936854 |
Pig chromosome | chr7 |
Pig SNP position | 64116621 |
PubMed ID | 24938310 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/24938310 |
Study | Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population. |
Disease/Trait | Exfoliation glaucoma or exfoliation syndrome |
Initial sample | 201 Japanese ancestry cases, 697 Japanese ancestry controls |
Replication sample | 121 Japanese ancestry cases, 263 Japanese ancestry controls |
Region | 15q24.1 |
Chromosome id | chr15 |
Chromosome position | 73936854 |
Reported gene | LOXL1 |
Mapped gene | LOXL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4016 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs893818-T |
SNPs | rs893818 |
Merged | 0 |
SNP id current | 893818 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.535 |
P value | 3E-84 |
Pvalue mlog | 83.5228787452803 |
P value text | |
Or beta | 20.94 |
%95 Ci | [13.98-31.39] |
Platform | Affymetrix [652792] |
CNV | N |
Mapped trait | exfoliation syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004235 |
Study accession | GCST002486 |