Human SNP ID | rs893817 |
---|---|
Human chromosome | chr15 |
Human SNP position | 73936724 |
Pig chromosome | chr7 |
Pig SNP position | 64116746 |
PubMed ID | 19584346 |
---|---|
Journal | JAMA |
Link | www.ncbi.nlm.nih.gov/pubmed/19584346 |
Study | Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data. |
Disease/Trait | Aortic root size |
Initial sample | 12,612 European ancestry individuals |
Replication sample | 4,094 European ancestry individuals |
Region | 15q24.1 |
Chromosome id | chr15 |
Chromosome position | 73936724 |
Reported gene | LOXL1 |
Mapped gene | LOXL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4016 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs893817-G |
SNPs | rs893817 |
Merged | 0 |
SNP id current | 893817 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.02 |
%95 Ci | [0.01-0.03] cm increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | aortic root size |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005037 |
Study accession | GCST000442 |