SNP Detail For rs893817
1.Mapping Information
Human SNP ID rs893817
Human chromosome chr15
Human SNP position 73936724
Pig chromosome chr7
Pig SNP position 64116746
2.Annotation Information
PubMed ID19584346
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/19584346
StudyGenetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
Disease/TraitAortic root size
Initial sample12,612 European ancestry individuals
Replication sample4,094 European ancestry individuals
Region15q24.1
Chromosome idchr15
Chromosome position73936724
Reported geneLOXL1
Mapped geneLOXL1
Upstream gene id
Downstream gene id
SNP gene ids4016
Upstream gene distance
Downstream gene distance
SNP risk allelers893817-G
SNPsrs893817
Merged0
SNP id current893817
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.02
%95 Ci[0.01-0.03] cm increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitaortic root size
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005037
Study accessionGCST000442