SNP Detail For rs893363
1.Mapping Information
Human SNP ID rs893363
Human chromosome chr3
Human SNP position 53813035
Pig chromosome chr13
Pig SNP position 38979992
2.Annotation Information
PubMed ID24144296
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24144296
StudyNine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
Disease/TraitAxial length
Initial sample12,531 European ancestry individuals
Replication sample8,216 Asian ancestry individuals
Region3p21.1
Chromosome idchr3
Chromosome position53813035
Reported geneSELK, IL17RB, CACNA1D, CHDH, ACTR8
Mapped geneCACNA1D
Upstream gene id
Downstream gene id
SNP gene ids776
Upstream gene distance
Downstream gene distance
SNP risk allelers893363-A
SNPsrs893363
Merged0
SNP id current893363
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.6514
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.0513
%95 Ci[0.029-0.074] unit increase
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitaxial length measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005318
Study accessionGCST002115