Human SNP ID | rs893363 |
---|---|
Human chromosome | chr3 |
Human SNP position | 53813035 |
Pig chromosome | chr13 |
Pig SNP position | 38979992 |
PubMed ID | 24144296 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24144296 |
Study | Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. |
Disease/Trait | Axial length |
Initial sample | 12,531 European ancestry individuals |
Replication sample | 8,216 Asian ancestry individuals |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 53813035 |
Reported gene | SELK, IL17RB, CACNA1D, CHDH, ACTR8 |
Mapped gene | CACNA1D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 776 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs893363-A |
SNPs | rs893363 |
Merged | 0 |
SNP id current | 893363 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.6514 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.0513 |
%95 Ci | [0.029-0.074] unit increase |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | axial length measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005318 |
Study accession | GCST002115 |