Human SNP ID | rs892085 |
---|---|
Human chromosome | chr19 |
Human SNP position | 10707416 |
Pig chromosome | chr2 |
Pig SNP position | 69851254 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Psoriasis |
Initial sample | 4,212 European ancestry cases, 8,032 European ancestry controls |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10707416 |
Reported gene | ILF3, CARM1 |
Mapped gene | QTRT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 81890 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs892085-A |
SNPs | rs892085 |
Merged | 0 |
SNP id current | 892085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.172 |
%95 Ci | [1.103-1.245] |
Platform | Affymetrix, Illumina, Perlegen [up to 5493100] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002738 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10707416 |
Reported gene | ILF3, QTRT1 |
Mapped gene | QTRT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 81890 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs892085-A |
SNPs | rs892085 |
Merged | 0 |
SNP id current | 892085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.566 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.09-1.23] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 26626624 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26626624 |
Study | Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture. |
Disease/Trait | Psoriasis vulgaris |
Initial sample | 4,007 European ancestry cases, 4,934 European ancestry controls |
Replication sample | up to 9,075 European ancestry cases, up to European ancestry 12,726 controls |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10707416 |
Reported gene | ILF3, CARM1 |
Mapped gene | QTRT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 81890 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs892085-A |
SNPs | rs892085 |
Merged | 0 |
SNP id current | 892085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.114 |
%95 Ci | NR |
Platform | Illumina [up to 11532644] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003268 |