SNP Detail For rs89107
1.Mapping Information
Human SNP ID rs89107
Human chromosome chr6
Human SNP position 118256880
Pig chromosome chr1
Pig SNP position 49169799
2.Annotation Information
PubMed ID19584346
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/19584346
StudyGenetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
Disease/TraitCardiac structure and function
Initial sample12,612 European ancestry individuals
Replication sample4,094 European ancestry individuals
Region6q22.31
Chromosome idchr6
Chromosome position118256880
Reported geneC6orf204, SLC35F1, PLN
Mapped geneSLC35F1
Upstream gene id
Downstream gene id
SNP gene ids222553
Upstream gene distance
Downstream gene distance
SNP risk allelers89107-G
SNPsrs89107
Merged0
SNP id current89107
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000000001
Pvalue mlog9
P value text(LV internal diastolic dimensions)
Or beta0.03
%95 Ci[0.02-0.04] cm decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcardiovascular measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004298
Study accessionGCST000441