SNP Detail For rs889472
1.Mapping Information
Human SNP ID rs889472
Human chromosome chr16
Human SNP position 79612092
Pig chromosome chr6
Pig SNP position 8548283
2.Annotation Information
PubMed ID22797727
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22797727
StudyMeta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.
Disease/TraitRenal function-related traits (urea)
Initial sample21,417 East Asian ancestry individuals
Replication sample11,657 East Asian ancestry individuals
Region16q23.2
Chromosome idchr16
Chromosome position79612092
Reported geneMAF
Mapped geneLOC101928230
Upstream gene id
Downstream gene id
SNP gene ids101928230
Upstream gene distance
Downstream gene distance
SNP risk allelers889472-C
SNPsrs889472
Merged0
SNP id current889472
Contextintergenic_variant
Intergenic0
Allele frequency0.57
P value0.000000001
Pvalue mlog9
P value text
Or beta0.0711
%95 Ci[0.048-0.094] mg/dl increase
PlatformAffymetrix, Illumina [2278301] (imputed)
CNVN
Mapped traitrenal system measurement, uric acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004742, http://www.ebi.ac.uk/efo/EFO_0004761
Study accessionGCST001608