Human SNP ID | rs887912 |
---|---|
Human chromosome | chr2 |
Human SNP position | 59075742 |
Pig chromosome | chr3 |
Pig SNP position | 87000147 |
PubMed ID | 20935630 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20935630 |
Study | Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. |
Disease/Trait | Body mass index |
Initial sample | Up to 123,865 European ancestry individuals |
Replication sample | Up to 125,931 European ancestry individuals |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 59075742 |
Reported gene | FANCL |
Mapped gene | LINC01122 - LOC101927285 |
Upstream gene id | 400955 |
Downstream gene id | 101927285 |
SNP gene ids | |
Upstream gene distance | 11976 |
Downstream gene distance | 141966 |
SNP risk allele | rs887912-T |
SNPs | rs887912 |
Merged | 0 |
SNP id current | 887912 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 0.1 |
%95 Ci | [0.06-0.14] kg/m2 increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2800000] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST000830 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 59075742 |
Reported gene | FANCL |
Mapped gene | LINC01122 - LOC101927285 |
Upstream gene id | 400955 |
Downstream gene id | 101927285 |
SNP gene ids | |
Upstream gene distance | 11976 |
Downstream gene distance | 141966 |
SNP risk allele | rs887912-T |
SNPs | rs887912 |
Merged | 0 |
SNP id current | 887912 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | (Obesity class I) |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 59075742 |
Reported gene | FANCL |
Mapped gene | LINC01122 - LOC101927285 |
Upstream gene id | 400955 |
Downstream gene id | 101927285 |
SNP gene ids | |
Upstream gene distance | 11976 |
Downstream gene distance | 141966 |
SNP risk allele | rs887912-T |
SNPs | rs887912 |
Merged | 0 |
SNP id current | 887912 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | (Obesity class II) |
Or beta | 1.1 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |